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Phytozome blast search doe.gov

WebbThe TDC protein sequence from C. roseus (UniProt: P17770) was used to BLAST search the Phytozome v10 public database and allowed the identification of 11 deduced protein sequences in clementine and 11 sequences in sweet orange genomes, with significant similarity scores to the query sequence (Supplementary Materials Tables S1 and S2). Webb9 feb. 2024 · A More Intuitive Phytozome Interface Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

A More Intuitive Phytozome Interface - DOE Joint Genome Institute

WebbWelcome to the JGI API documentation page! The JGI application programming interface (API) lets you explore and download all of the genomic data available through … WebbPhytozome; BLAST; HELP! Help us improve the JGI ... JGI: [email protected] Funding: The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office … honda crf 250 bike https://remax-regency.com

Phytozome - Database Commons - CNCB

Webb28 juli 2024 · Phytozome v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more … Webb6 juli 2009 · A More Intuitive Phytozome Interface Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface. Webb21 mars 2024 · The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences … honda crf 250 battery

JGI Data Portal - Energy

Category:Info - PhytozomeV12 - Energy

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Phytozome blast search doe.gov

Phytozome v13

WebbThe Plant Program focuses on the fundamental biology of photosynthesis, conversion of solar to chemical energy. Other areas of interest include characterizing ecosystems and … WebbChlamydomonas reinhardtii is a model green microalga capable of heterotrophic growth on acetic acid but not fatty acids, despite containing a full complement of genes for β-oxidation. Recent reports indicate that the alga preferentially sequesters, rather than breaks down, lipid acyl chains as a means to rebuild its membranes rapidly. Here, we assemble …

Phytozome blast search doe.gov

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WebbSearch: An InterMine interface to data from Phytozome Protein : Zm00008a010297_P01 Z. mays PH207 v1.1 ... Phytozome Gene View; Links to other Mines. Araport. CowpeaMine. MedicMine. GrapeMine. ChickpeaMine. LegumeMine. SoyMine BeanMine. Ontology Annotation Displayer ... Webb17 juni 2024 · Phytozome is the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute. Families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights …

WebbPhytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for … WebbTools for exploring the Phytozome collection of green plant genomes. Phytozome v13.

Webb25 juli 2024 · Phytozome background information for the Populus trichocarpa Stettler14 ... Phytozome genome ID: 532 • NCBI taxonomy ID: 3694. RST JGI. Keyword search; Blast search; JBrowse; Synteny; Download; Release Date: 2024-07-25 BioProject: PRJNA332131 Accession ID ... Please cite "Populus trichocarpa var Stettler14 v1.1 DOE-JGI, http ... WebbPhytozome; BLAST; HELP! Help us improve the JGI website! Go here to fill out our form. Portal name: PhytozomeV11 Project PI: Kristen Taylor . ... Genome Portal version:8.18.149 content:335e87840a portal-web-4.jgi.lbl.gov Release Date:17-Mar-2024 18:18:56.203 PST Current Date:12-Apr-2024 11:15:05.533 PDT ...

WebbA More Intuitive Phytozome Interface Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a …

WebbThe Plant Program focuses on the fundamental biology of photosynthesis, conversion of solar to chemical energy. Other areas of interest include characterizing ecosystems and the role of terrestrial plants and oceanic phytoplankton in carbon sequestration; the role of plants in coping with toxic pollutants in soils by hyper-accumulation and ... honda crf250 for saleWebbJGI Data Portal: browse and download genomic data history 49\u0027sWebbTools for exploring the Phytozome collection of green plant genomes Phytozome v13 Phytozome upload of sequence for local alignment against our collected genomes. history 5 love in the future ep 20 bilibiliWebb26 nov. 2014 · A team of French researchers developed an array that allowed them to produce high-resolution genetic maps of two eucalyptus species that they then compared to the reference genome of eucalyptus produced by a team including DOE JGI researchers. In a report published earlier this year, the eucalyptus genome was found to have more … honda crf250f 2023 reviewWebbPhytozome; BLAST; HELP! Help us improve the JGI website! Go here to fill out our form. Portal name: PhytozomeV12 Project PI: Kristen Taylor . ... Genome Portal … history 5 ep 14 eng subWebbPhytozome; BLAST; HELP! Help us improve the JGI ... JGI: [email protected] Funding: The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office ... Genome Portal version:8.18.149 content:335e87840a portal-web-1.jgi.lbl.gov Release Date:17-Mar-2024 18: 18:56 ... history621WebbArabidopsis thaliana, arguably the world's most important and tractable plant experimental system, is also in this family. The strategy behind the BMAP project is to generate high quality genome and transcriptome data sets and associated analyses for 20 species: 19 Brassicaceae plus outgroup species Cleome violacea). history 5th class